CummeRbundQC gives a way of assessing the quality of differential expression analysis performed with Cuffdiff. It takes a cuffdiff.zip folder as input and produces a report that can be viewed on the Seven Bridges Platform or downloaded to your local drive. The report is also rendered in a page that can be viewed directly from outside the Platform in any internet browser. Files that can be visualized with CummeRbundQC have the special extension cuffdiffcummerbund_report.b64html.
Click any file with the extension cuffdiffcummerbund_report.b64html to access the CummeRbundQC report.
The left sidebar shows the contents of the CummeRbundQC report. To fully understand the report and plots, we recommend that you read the tutorial for this package.