FastQC is one of the most popular quality control tools for high-throughput sequence data.

To get a FastQC report for your FASTQ files, run the public FastQC analysis workflow. The workflow outputs a report file whose name ends fastqc.b64html that can be viewed directly in your internet browser.

FastQC ReportFastQC Report

FastQC Report

The left sidebar of the FastQC report shows its contents. For a full explanation of the information shown in the report, we refer you to the package tutorial, in particular to section 3 on Analysis Modules.